Yasushi Sato Laboratory, Ehime University

LigninJ, the macro program for ImageJ

Nakamura M, Kamehama T, Sato Y (2020) Image analysis of stress-induced lignin deposition in Arabidopsis thaliana using the macro program LigninJ for ImageJ software. Plant Biotechnology
https://doi.org/10.5511/plantbiotechnology.20.0110a

Files for download

(2021.8.8 updated)

LigninJ1-2.ijm (zip file)

Miner revision for the proper operation on the present ImageJ version (1.53k). In "file name_2.jpg" image, the measured areas are not painted in red, but are surrounded by lines. Measurement results are agree between LigninJ1-2.ijm and LigninJ.ijm.

(2021.3.31 updated)

LigninJ1-1.ijm (zip file)

Miner revision for the stable operation on the present ImageJ version (1.53i). Measurement results are agree between LigninJ1-1.ijm and LigninJ.ijm.

(2020.3.20 published)

        LigninJ.ijm

        LigninJ.ijm (zip file)

        Results_calculation_excel_macro (zip file)

        Sample pictures
            lig_root_3 days (zip file)

Ler_cotyledon_3 days (zip file) (For LigninJ analysis, adjust 186.5 pixels as 100 µm)

(Last updated, 2021.8.8)